Department of Chemistry

Jane Clarke Publications (2004)

The folding of spectrin domains II: phi-value analysis of R16.
Scott KA, Randles LG, Clarke J
Animals, Brain Chemistry, Chickens, Drug Stability, Kinetics, Models, Molecular, Mutagenesis, Site-Directed, Protein Denaturation, Protein Engineering, Protein Folding, Protein Structure, Secondary, Protein Structure, Tertiary, Recombinant Proteins, Spectrin, Thermodynamics 2004, 30, 207-221. DOI: 10.1016/j.jmb.2004.09.023

The folding of spectrin domains I: wild-type domains have the same stability but very different kinetic properties.
Scott KA, Batey S, Hooton KA, Clarke J
Animals, Brain Chemistry, Chickens, Drug Stability, Kinetics, Models, Molecular, Protein Folding, Protein Structure, Tertiary, Recombinant Proteins, Spectrin, Thermodynamics 2004, 27, 195-205. DOI: 10.1016/j.jmb.2004.09.037

Comparison of the transition states for folding of two Ig-like proteins from different superfamilies.
Geierhaas CD, Paci E, Vendruscolo M, Clarke J
Amino Acid Sequence, Fibronectins, Humans, Molecular Sequence Data, Multigene Family, Muscle Proteins, Peptide Fragments, Protein Folding, Protein Kinases, Protein Structure, Secondary, Protein Structure, Tertiary, Tenascin 2004, 26, 1111-1123. DOI: 10.1016/j.jmb.2004.08.100

Atomic force microscopy: mechanical unfolding of proteins.
Rounsevell R, Forman JR, Clarke J
Cloning, Molecular, Microscopy, Atomic Force, Protein Folding, Proteins 2004, 33, 100-111. DOI: 10.1016/j.ymeth.2004.03.007

The origin of protein sidechain order parameter distributions.
Best RB, Clarke J, Karplus M
J Am Chem Soc 2004, 33, 7734-7735. DOI: 10.1021/ja049078w

The importance of loop length in the folding of an immunoglobulin domain.
Wright CF, Christodoulou J, Dobson CM, Clarke J
Amino Acid Sequence, Humans, Immunoglobulins, Molecular Sequence Data, Muscle Proteins, Mutation, Protein Folding, Protein Kinases, Protein Structure, Tertiary, Structural Homology, Protein 2004, 7, 443-453. DOI: 10.1093/protein/gzh052

Thermodynamic characterisation of two transition states along parallel protein folding pathways.
Wright CF, Steward A, Clarke J
Protein Folding, Protein Structure, Tertiary, Proteins, Temperature, Thermodynamics 2004, 18, 445-451. DOI: 10.1016/j.jmb.2004.02.062

Using dynamic force spectroscopy, protein engineering, structural studies and molecular dynamics simulations to investigate the effect of force on a protein unfolding landscape.
Clarke J
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 2004, 0, U476-U476.

Single molecule studies of protein folding by atomic force microscopy(AFM).
Ng S, Rounsevell R, Steward A, Randles L, Clarke J
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 2004, 0, U545-U545.

Hydrophobic core fluidity of homologous protein domains: relation of side-chain dynamics to core composition and packing.
Best RB, Rutherford TJ, Freund SM, Clarke J
Biochemistry 2004, 24, 1145-1155. DOI: 10.1021/bi035658e

FnIII domains: Predicting mechanical stability
Rounsevell RWS, Clarke J
STRUCTURE 2004, 3, 4-5. DOI: 10.1016/j.str.2003.12.006