Department of Chemistry

Daan Frenkel FRS Publications (2008)


Out-of-equilibrium processes in suspensions of oppositely charged colloids: liquid-to-crystal nucleation and gel formation
Sanz E, Valeriani C, Vissers T, Fortini A, Leunissen ME, van Blaaderen A, Frenkel D, Dijkstra M
JOURNAL OF PHYSICS-CONDENSED MATTER, 2008, 49, -. DOI: 10.1088/0953-8984/20/49/494247


Multiple occupancy crystals formed by purely repulsive soft particles
Mladek BM, Charbonneau P, Likos CN, Frenkel D, Kahl G
JOURNAL OF PHYSICS-CONDENSED MATTER, 2008, 49, -. DOI: 10.1088/0953-8984/20/49/494245


Disordered flanks prevent peptide aggregation.
Abeln S, Frenkel D
PLoS Comput Biol, 2008-12, 12, e1000241-. DOI: 10.1371/journal.pcbi.1000241


Two-step vapor-crystal nucleation close below triple point
van Meel JA, Page AJ, Sear RP, Frenkel D
J CHEM PHYS, 2008, 20, -. DOI: 10.1063/1.3026364


Homogeneous nucleation under shear in a two-dimensional Ising model: Cluster growth, coalescence, and breakup
Allen RJ, Valeriani C, Tanase-Nicola S, ten Wolde PR, Frenkel D
J CHEM PHYS, 2008, 13, -. DOI: 10.1063/1.2981052


Quasibinary amorphous phase in a three-dimensional system of particles with repulsive-shoulder interactions
Fomin YD, Gribova NV, Ryzhov VN, Stishov SM, Frenkel D
J CHEM PHYS, 2008, 6, -. DOI: 10.1063/1.2965880


Liquid-vapor transition driven by bond disorder
Bozorgui B, Frenkel D
PHYS REV LETT, 2008, 4, -. DOI: 10.1103/PhysRevLett.101.045701


Dynamical heterogeneity in a glass-forming ideal gas
Charbonneau P, Das C, Frenkel D
PHYS REV E, 2008-07, 1, -. DOI: 10.1103/PhysRevE.78.011505


Random organization - Ordered chaos
Frenkel D
NAT PHYS, 2008-05, 5, 345-346. DOI: 10.1038/nphys973


Multi-scale simulations provide supporting evidence for the hypothesis of intramolecular protein translocation in GroEL/GroES complexes.
Coluzza I, De Simone A, Fraternali F, Frenkel D
PLoS Comput Biol, 2008-02, 2, e1000006-. DOI: 10.1371/journal.pcbi.1000006


Irreducible finite-size effects in the surface free energy of NaCl crystals from crystal-nucleation data.
Zykova-Timan T, Valeriani C, Sanz E, Frenkel D, Tosatti E
Phys Rev Lett, 2008, 3, 36103-.


Protein shape and crowding drive domain formation and curvature in biological membranes
Frese RN, Pamies JC, Olsen JD, Bahatyrova S, van der Weij-de Wit CD, Aartsma TJ, Otto C, Hunter CN, Frenkel D, van Grondelle R
BIOPHYS J, 2008, 2, 640-647. DOI: 10.1529/biophysj.107.116913


State-of-the-art models for the phase diagram of carbon and diamond nucleation
Ghiringhelli LM, Valeriani C, Los JH, Meijer EJ, Fasolino A, Frenkel D
Molecular Physics, 2008, 16-18, 2011-2038.


Harvesting graphics power for MD simulations
van Meel JA, Arnold A, Frenkel D, Zwart SFP, Belleman RG
MOL SIMULAT, 2008, 3, 259-266. DOI: 10.1080/08927020701744295


Dispersion of charged tracers in charged porous media
Rotenberg B, Pagonabarraga I, Frenkel D
EPL-EUROPHYS LETT, 2008, 3, -. DOI: 10.1209/0295-5075/83/34004


Dispersion of charged tracers in charged porous media
Rotenberg B, Pagonabarraga I, Frenkel D
EPL, 2008, 3, -.