Department of Chemistry

Daan Frenkel FRS Publications (2008)


Out-of-equilibrium processes in suspensions of oppositely charged colloids: liquid-to-crystal nucleation and gel formation
Sanz E, Valeriani C, Vissers T, Fortini A, Leunissen ME, van Blaaderen A, Frenkel D, Dijkstra M
JOURNAL OF PHYSICS-CONDENSED MATTER 2008, 7, -. DOI: 10.1088/0953-8984/20/49/494247


Multiple occupancy crystals formed by purely repulsive soft particles
Mladek BM, Charbonneau P, Likos CN, Frenkel D, Kahl G
JOURNAL OF PHYSICS-CONDENSED MATTER 2008, 13, -. DOI: 10.1088/0953-8984/20/49/494245


Disordered flanks prevent peptide aggregation.
Abeln S, Frenkel D
Binding Sites, Computer Simulation, Models, Chemical, Models, Molecular, Multiprotein Complexes, Peptides, Protein Binding, Protein Conformation 2008, 11, e1000241 -. DOI: 10.1371/journal.pcbi.1000241


Two-step vapor-crystal nucleation close below triple point
van Meel JA, Page AJ, Sear RP, Frenkel D
J CHEM PHYS 2008, 0, -. DOI: 10.1063/1.3026364


Homogeneous nucleation under shear in a two-dimensional Ising model: Cluster growth, coalescence, and breakup
Allen RJ, Valeriani C, Tanase-Nicola S, ten Wolde PR, Frenkel D
J CHEM PHYS 2008, 21, -. DOI: 10.1063/1.2981052


Quasibinary amorphous phase in a three-dimensional system of particles with repulsive-shoulder interactions
Fomin YD, Gribova NV, Ryzhov VN, Stishov SM, Frenkel D
J CHEM PHYS 2008, 17, -. DOI: 10.1063/1.2965880


Liquid-vapor transition driven by bond disorder
Bozorgui B, Frenkel D
PHYS REV LETT 2008, 7, -. DOI: 10.1103/PhysRevLett.101.045701


Dynamical heterogeneity in a glass-forming ideal gas
Charbonneau P, Das C, Frenkel D
PHYS REV E 2008, 2, -. DOI: 10.1103/PhysRevE.78.011505


Random organization - Ordered chaos
Frenkel D
NAT PHYS 2008, 0, 345-346. DOI: 10.1038/nphys973


Multi-scale simulations provide supporting evidence for the hypothesis of intramolecular protein translocation in GroEL/GroES complexes.
Coluzza I, De Simone A, Fraternali F, Frenkel D
Binding Sites, Chaperonin 10, Chaperonin 60, Computer Simulation, Evidence-Based Medicine, Models, Biological, Models, Chemical, Models, Molecular, Molecular Chaperones, Motion, Multiprotein Complexes, Protein Binding, Protein Folding, Protein Transport, Signal Transduction 2008, 3, e1000006 -. DOI: 10.1371/journal.pcbi.1000006


Irreducible finite-size effects in the surface free energy of NaCl crystals from crystal-nucleation data.
Zykova-Timan T, Valeriani C, Sanz E, Frenkel D, Tosatti E
2008, 11, 036103 -.


State-of-the-art models for the phase diagram of carbon and diamond nucleation
Ghiringhelli LM, Valeriani C, Los JH, Meijer EJ, Fasolino A, Frenkel D
Molecular Physics 2008, 11, 2011-2038.


Harvesting graphics power for MD simulations
van Meel JA, Arnold A, Frenkel D, Zwart SFP, Belleman RG
MOL SIMULAT 2008, 48, 259-266. DOI: 10.1080/08927020701744295


Dispersion of charged tracers in charged porous media
Rotenberg B, Pagonabarraga I, Frenkel D
EPL-EUROPHYS LETT 2008, 7, -. DOI: 10.1209/0295-5075/83/34004


Dispersion of charged tracers in charged porous media
Rotenberg B, Pagonabarraga I, Frenkel D
EPL 2008, -.